Index

A

AbstractDetector (class in abtem.detect) AbstractFrozenPhonons (class in abtem.temperature) AbstractPotential (class in abtem.potentials) AbstractPotentialBuilder (class in abtem.potentials) AbstractScan (class in abtem.scan) abtem.base_classes module abtem.detect module abtem.dft module abtem.measure module abtem.noise module abtem.potentials module abtem.scan module abtem.structures module abtem.temperature module abtem.transfer module abtem.visualize.mpl module abtem.waves module

Accelerator (class in abtem.base_classes) add_scan_noise() (in module abtem.noise) add_to_mpl_plot() (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.scan.PositionScan method) allocate_measurement() (abtem.detect.AnnularDetector method) (abtem.detect.FlexibleAnnularDetector method) (abtem.detect.PixelatedDetector method) (abtem.detect.SegmentedDetector method) (abtem.detect.WavefunctionDetector method) (abtem.waves.Waves method) angle() (abtem.scan.LineScan property) AnnularDetector (class in abtem.detect) antialias_aperture() (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property) AntialiasFilter (class in abtem.base_classes) apply_ctf() (abtem.waves.Waves method) array() (abtem.measure.Measurement property) (abtem.potentials.PotentialArray property) (abtem.potentials.TransmissionFunction property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property) as_complex_image() (abtem.transfer.CTF method) (abtem.waves.Waves method) as_transmission_function() (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) atoms() (abtem.potentials.Potential property)

B

bandlimit() (abtem.base_classes.AntialiasFilter method) (in module abtem.measure) block_zeroth_order_spot() (in module abtem.measure) build() (abtem.dft.GPAWPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.Potential method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.SMatrix method)

C

Cache (class in abtem.base_classes) cache_clear_callback() (in module abtem.base_classes) cached() (abtem.base_classes.Cache property) cached_method() (in module abtem.base_classes) calculate_fwhm() (in module abtem.measure) Calibration (class in abtem.measure) calibrations() (abtem.measure.Measurement property) (abtem.scan.AbstractScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.scan.PositionScan property) calibrations_from_grid() (in module abtem.measure) cartesian2polar() (in module abtem.transfer) center_of_mass() (in module abtem.measure) check_is_defined() (abtem.base_classes.Accelerator method) (abtem.base_classes.Grid method) check_match() (abtem.base_classes.Accelerator method) (abtem.base_classes.Grid method) check_slice_idx() (abtem.dft.GPAWPotential method) (abtem.potentials.AbstractPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.CrystalPotential method) (abtem.potentials.Potential method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) clear() (abtem.base_classes.Cache method) collapse() (abtem.waves.SMatrixArray method) copy() (abtem.base_classes.Accelerator method) (abtem.base_classes.Grid method) (abtem.detect.AnnularDetector method) (abtem.detect.FlexibleAnnularDetector method) (abtem.detect.SegmentedDetector method) (abtem.dft.GPAWPotential method) (abtem.measure.Calibration method) (abtem.measure.Measurement method) (abtem.potentials.AbstractPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.CrystalPotential method) (abtem.potentials.Potential method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) (abtem.scan.AbstractScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.scan.PositionScan method) (abtem.temperature.AbstractFrozenPhonons method) (abtem.temperature.DummyFrozenPhonons method) (abtem.temperature.FrozenPhonons method) (abtem.temperature.MDFrozenPhonons method) (abtem.waves.PlaneWave method) (abtem.waves.SMatrix method) (abtem.waves.SMatrixArray method) (abtem.waves.Waves method)

CrystalPotential (class in abtem.potentials) CTF (class in abtem.transfer) ctf() (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) cut_rectangle() (in module abtem.structures) cutoff_tolerance() (abtem.potentials.Potential property)

D

defocus() (abtem.transfer.CTF property) detect() (abtem.detect.AnnularDetector method) (abtem.detect.FlexibleAnnularDetector method) (abtem.detect.PixelatedDetector method) (abtem.detect.SegmentedDetector method) (abtem.detect.WavefunctionDetector method)

diffraction_pattern() (abtem.waves.Waves method) diffractograms() (abtem.measure.Measurement method) dimensions() (abtem.base_classes.Grid property) (abtem.measure.Measurement property) direction() (abtem.scan.LineScan property) DummyFrozenPhonons (class in abtem.temperature)

E

end() (abtem.scan.GridScan property) (abtem.scan.LineScan property) endpoint() (abtem.base_classes.Grid property) energy() (abtem.base_classes.Accelerator property) (abtem.potentials.TransmissionFunction property) (abtem.transfer.CTF property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property) Event (class in abtem.base_classes) expansion_cutoff() (abtem.waves.SMatrix property) extent() (abtem.base_classes.Grid property) (abtem.dft.GPAWPotential property) (abtem.potentials.AbstractPotential property) (abtem.potentials.AbstractPotentialBuilder property) (abtem.potentials.CrystalPotential property) (abtem.potentials.Potential property) (abtem.potentials.PotentialArray property) (abtem.potentials.TransmissionFunction property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property)

F

FlexibleAnnularDetector (class in abtem.detect) focal_spread() (abtem.transfer.CTF property) fourier_space_offset() (in module abtem.measure)

FresnelPropagator (class in abtem.waves) frozen_phonons() (abtem.potentials.Potential property) FrozenPhonons (class in abtem.temperature) function() (abtem.potentials.Potential property)

G

gaussian_filter() (abtem.measure.Measurement method) gaussian_spread() (abtem.transfer.CTF property) generate_atoms() (abtem.temperature.AbstractFrozenPhonons method) (abtem.temperature.DummyFrozenPhonons method) (abtem.temperature.FrozenPhonons method) (abtem.temperature.MDFrozenPhonons method) generate_frozen_phonon_potentials() (abtem.potentials.Potential method) generate_slices() (abtem.dft.GPAWPotential method) (abtem.potentials.AbstractPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.CrystalPotential method) (abtem.potentials.Potential method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) generate_transmission_functions() (abtem.dft.GPAWPotential method) (abtem.potentials.AbstractPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.CrystalPotential method) (abtem.potentials.Potential method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) get_cutoff() (abtem.potentials.Potential method) get_integrator() (abtem.potentials.Potential method) get_paw_corrections() (in module abtem.dft) get_positions() (abtem.scan.AbstractScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.scan.PositionScan method)

get_scan_area() (abtem.scan.GridScan method) get_slice_thickness() (abtem.dft.GPAWPotential method) (abtem.potentials.AbstractPotential method) (abtem.potentials.AbstractPotentialBuilder method) (abtem.potentials.CrystalPotential method) (abtem.potentials.Potential method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) get_tapered_function() (abtem.potentials.Potential method) GPAWPotential (class in abtem.dft) gpts() (abtem.base_classes.Grid property) (abtem.dft.GPAWPotential property) (abtem.potentials.AbstractPotential property) (abtem.potentials.AbstractPotentialBuilder property) (abtem.potentials.CrystalPotential property) (abtem.potentials.Potential property) (abtem.potentials.PotentialArray property) (abtem.potentials.TransmissionFunction property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property) Grid (class in abtem.base_classes) GridScan (class in abtem.scan)

H

hits() (abtem.base_classes.Cache property)

I

inner() (abtem.detect.AnnularDetector property) (abtem.detect.SegmentedDetector property) insert() (abtem.base_classes.Cache method) insert_new_measurement() (abtem.scan.AbstractScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.scan.PositionScan method) integrate() (abtem.detect.AnnularDetector method) (abtem.measure.Measurement method) (abtem.potentials.PotentialIntegrator method)

integrate_disc() (in module abtem.measure) intensity() (abtem.waves.Waves method) interpolate() (abtem.measure.Measurement method) interpolate_line() (abtem.measure.Measurement method) interpolate_rectangle() (in module abtem.dft) interpolated_gpts() (abtem.waves.SMatrixArray property) interpolation() (abtem.waves.SMatrix property) intgrad2d() (in module abtem.measure) is_cell_hexagonal() (in module abtem.structures) is_cell_orthogonal() (in module abtem.structures) is_cell_valid() (in module abtem.structures)

K

k() (abtem.waves.SMatrixArray property)

L

LineScan (class in abtem.scan)

M

match() (abtem.base_classes.Accelerator method) (abtem.base_classes.Grid method) MDFrozenPhonons (class in abtem.temperature) mean() (abtem.measure.Measurement method) Measurement (class in abtem.measure) misses() (abtem.base_classes.Cache property) module abtem.base_classes abtem.detect abtem.dft abtem.measure abtem.noise abtem.potentials abtem.scan abtem.structures abtem.temperature abtem.transfer abtem.visualize.mpl abtem.waves

multislice() (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.SMatrix method) (abtem.waves.SMatrixArray method) (abtem.waves.Waves method)

N

name() (abtem.measure.Measurement property) nbins_angular() (abtem.detect.SegmentedDetector property) nbins_radial() (abtem.detect.SegmentedDetector property) notify() (abtem.base_classes.Event method) notify_count() (abtem.base_classes.Event property) num_slices() (abtem.dft.GPAWPotential property) (abtem.potentials.AbstractPotential property) (abtem.potentials.AbstractPotentialBuilder property) (abtem.potentials.CrystalPotential property) (abtem.potentials.Potential property) (abtem.potentials.PotentialArray property) (abtem.potentials.TransmissionFunction property)

O

observe() (abtem.base_classes.Event method) orthogonalize_cell() (in module abtem.structures)

outer() (abtem.detect.AnnularDetector property) (abtem.detect.SegmentedDetector property)

P

pad_atoms() (in module abtem.structures) parameters() (abtem.potentials.Potential property) (abtem.transfer.CTF property) parametrization() (abtem.potentials.Potential property) partition_scan() (abtem.scan.GridScan method) PixelatedDetector (class in abtem.detect) plane_to_axes() (in module abtem.structures) PlaneWave (class in abtem.waves) point_resolution() (in module abtem.transfer) poisson_noise() (in module abtem.noise) polar2cartesian() (in module abtem.transfer)

polar_aliases (in module abtem.transfer) polar_symbols (in module abtem.transfer) PositionScan (class in abtem.scan) Potential (class in abtem.potentials) PotentialArray (class in abtem.potentials) PotentialIntegrator (class in abtem.potentials) Probe (class in abtem.waves) probe_profile() (in module abtem.measure) project() (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) projection() (abtem.potentials.Potential property) propagate() (abtem.waves.FresnelPropagator method)

R

read() (abtem.measure.Measurement class method) (abtem.potentials.PotentialArray class method) (abtem.potentials.TransmissionFunction class method) (abtem.waves.Waves class method)

retrieve() (abtem.base_classes.Cache method) rolloff() (abtem.transfer.CTF property) rotational_average() (in module abtem.measure) round_to_power() (abtem.base_classes.Grid method)

S

sampling() (abtem.base_classes.Grid property) (abtem.dft.GPAWPotential property) (abtem.potentials.AbstractPotential property) (abtem.potentials.AbstractPotentialBuilder property) (abtem.potentials.CrystalPotential property) (abtem.potentials.Potential property) (abtem.potentials.PotentialArray property) (abtem.potentials.TransmissionFunction property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property) save_as_image() (abtem.measure.Measurement method) save_file() (abtem.detect.AbstractDetector property) (abtem.detect.AnnularDetector property) (abtem.detect.FlexibleAnnularDetector property) (abtem.detect.PixelatedDetector property) (abtem.detect.SegmentedDetector property) (abtem.detect.WavefunctionDetector property) scan() (abtem.waves.Probe method) (abtem.waves.SMatrix method) (abtem.waves.SMatrixArray method) scherzer_defocus() (in module abtem.transfer) SegmentedDetector (class in abtem.detect)

semiangle_cutoff() (abtem.transfer.CTF property) shape() (abtem.measure.Measurement property) (abtem.scan.AbstractScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.scan.PositionScan property) show() (abtem.detect.AnnularDetector method) (abtem.detect.FlexibleAnnularDetector method) (abtem.detect.SegmentedDetector method) (abtem.measure.Measurement method) (abtem.transfer.CTF method) (abtem.waves.Probe method) (abtem.waves.SMatrix method) (abtem.waves.Waves method) show_atoms() (in module abtem.visualize.mpl) show_measurement_1d() (in module abtem.visualize.mpl) show_measurement_2d() (in module abtem.visualize.mpl) sigma() (abtem.base_classes.Accelerator property) slice_thickness() (abtem.potentials.Potential property) SMatrix (class in abtem.waves) SMatrixArray (class in abtem.waves) squeeze() (abtem.measure.Measurement method) standardize_cell() (in module abtem.structures) start() (abtem.scan.GridScan property) (abtem.scan.LineScan property) step_size() (abtem.detect.FlexibleAnnularDetector property) sum() (abtem.measure.Measurement method)

T

tile() (abtem.measure.Measurement method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) (abtem.waves.Waves method) tilt() (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property)

to_hyperspy() (abtem.measure.Measurement method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) TransmissionFunction (class in abtem.potentials) transmit() (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method)

U

units() (abtem.measure.Measurement property)

W

watched_method() (in module abtem.base_classes) watched_property() (in module abtem.base_classes) WavefunctionDetector (class in abtem.detect) wavelength() (abtem.base_classes.Accelerator property) (abtem.potentials.TransmissionFunction property) (abtem.transfer.CTF property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.SMatrix property) (abtem.waves.SMatrixArray property) (abtem.waves.Waves property)

Waves (class in abtem.waves) write() (abtem.measure.Measurement method) (abtem.potentials.PotentialArray method) (abtem.potentials.TransmissionFunction method) (abtem.waves.Waves method)